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RazorBack::Bioseqio_ Member List
This is the complete list of members for RazorBack::Bioseqio_, including all inherited members.
- ANNOTERR enum value
- ANYFORMAT enum value
- autodetect_type(const string &S)
[protected, static]
- Bioseqio_()
[inline, protected]
- Bioseqio_(const Bioseqio_ &B)
[inline, protected]
- buffer()
[inline, protected]
- buffer(size_t Idx)
[inline, protected]
- Buffer
[private]
- BUFFERSIZE
[private, static]
- BuildCRCTable(unsigned int CRCTable[256])
[protected, static]
- clean_seq(string &S, int Type, bool Nocase, bool GapsOK=false) const
[protected]
- compare_basecount(const string &S, const int Acgtx[5], bool Isdna)
[protected, static]
- count_bases(const string &S, int Acgtx[5], bool Isdna)
[protected, static]
- crc_32(const string &buffer)
[protected, static]
- current_datestr()
[protected, static]
- EMBL enum value
- error_str(Errtype_ Err)
[static]
- Errtype_ enum name
- FASTA enum value
- fetch_buffer(istream &Inf)
[protected]
- FILEERR enum value
- format_str(Formatflags_ F)
[static]
- FORMATERR enum value
- Formatflags_ enum name
- GCG enum value
- gcg_checksum(const string &S)
[protected, static]
- IDERR enum value
- make_buffer()
[inline, protected]
- mol_weight(const string &S)
[protected, static]
- OK enum value
- operator=(const Bioseqio_ &B)
[inline, protected]
- parse_title(const char *Strc, string &Tok1, string &Rest)
[private, static]
- PIR enum value
- read_embl(istream &Inf, string &Id, string &Annot, string &Seq, int &Embllen, int Acgtx[5])
[protected]
- read_fasta(istream &Inf, string &Id, string &Title, string &Seq)
[protected]
- read_gcg(istream &Inf, string &Id, string &Annot, string &Seq, int &Gcglen, int &Gcgcheck, char &Typechar)
[protected]
- read_pir(istream &Inf, string &Id, string &Title, string &Annot, string &Seq)
[protected]
- read_swiss(istream &Inf, string &Id, string &Annot, string &Seq, int &Swlen, int &Mw, unsigned int &Crc32)
[protected]
- SEQERR enum value
- SWISS enum value
- swissembl_comment(ostream &Outf, const string &S)
[private, static]
- TITLEERR enum value
- TYPEERR enum value
- UNKNOWN enum value
- write_embl(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq, Monomer_::Type_ Type)
[protected, static]
- write_fasta(ostream &Outf, const string &ID, const string &Title, const string &Seq)
[protected, static]
- write_gcg(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq, Monomer_::Type_ Type)
[protected, static]
- write_pir(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq)
[protected, static]
- write_swiss(ostream &Outf, const string &ID, const string &Title, const string &Annot, const string &Seq)
[protected, static]
- ~Bioseqio_()
[inline, protected, virtual]
Generated at Wed Aug 21 09:33:44 2002 for The Razorback C++ Library: Bioinformatics by
1.2.6 written by Dimitri van Heesch,
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